Integrin ß4 (CD104, mRNA: ITGß4) contributes to anchoring cells to the extracellular matrix and is regulated in many cancer types where it contributes to tumor progression. One splice variant, integrin ß4E, is poorly characterized. We extracted several mutations from tumor samples within ITGB4 near the splice site that controls ITGß4E production, and computational analysis predicted six of these would alter splicing to alter ITGß4E abundance. One of these mutations, from an esophageal squamous cell carcinoma sample, was predicted to increase splicing toward ITGß4E. We verified this effect using a minigene, and observed that integrin ß4E slows esophageal squamous cell migration while other variants enhance migration, demonstrating that integrin ß4E regulation through mutations may contribute to esophageal squamous cell tumorigenesis.